Among others, interstate travel is only allowed for work, medical and educational purposes from Monday to Thursday, while travel for social events is strictly prohibited.
Individuals will only need to show the police the appointment slips of their dependants or parents.
Health Minister Dr Adham Baba says daily Covid-19 cases are still rising.
Those in the tourism industry see no hope of recovery until the interstate and interzone travel bans are lifted.
Joe Biden's team says travel restrictions will stay in place, with public health measures around international travel strengthened to mitigate the spread of the virus.
The Philippines is second only to Indonesia in infections and deaths across Asia.